miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|89137583|gb|DY583128.1|DY583128 GCACGAGCACAAAAATCGAAGCACATTTTGTAGCATTTCAAGAGTGGGATGTCGCCAAGAAACATTTGATCTCAAGGCGG
ATACCTCACCAGTGATGTTAAGCCTTATGGCAAATTGTTTTACTTGGATAAAACAAAGGAGAGAACCGTCGAAGAAAGTC
ACTCTTCTTATGGTGGGCTTGGACAATGCAGGAAAAACGTCCACGGTTGCTGATTTGACGGGAGAATCCACAGATGGAAT
AGTACCAACAATTGGCTTTCAAAATTCTTCTTTCTCGCTGTACAAGTTTCAAGTCACATTGTTTGATGTTGGAGGTGGAC
CAAGAATTCGTTCCATTTGGAAAATCTATTATGCAGATTGTTATGGTATTGTGTTTGTTGTGGATTCAAGTGATGCAGAC
AGATTGGAAGAAAGCAAGAAAATTCTACATGAAACAGAGGCACAGCCTCGTGTTAGTGGAAAACCTCTACTGGTACTTGG
AAATAAGCAGGACTGTGAAGGAGCATTGAATGAAAGTGAATTACGAAGAAAACTGGAGCTTGATAAGCTCACACAAAAAT
ACAAGTGTCCTTGCCAAGTGTTTTGCTGTACAGCAGTTCTTGGTAAAGAAAATAAAGTAGACAAACAAATTAAGAAAGGT
TTTCGCTGGCTTTTATCTGAGGTTTCCAAAGATTTTGAGAATATTTCTAGAAGAGTGGAAAAGGATCTTGCTGAGCAGAA
AATAGAGCAGGATATGGAAAAGGCTCGGCGAAAGGAAAGACTGCGCAAAACCAGAGAAGAGAGGGAAAAAGCCGAGAGGG
AGGCTGCAGCCGCTGAAAGGCAAGCAAGTTGTAGAAGACTCAGACGACGGTGTTGTAGCGGGCAAGGAC




Most similar to sp|Q8JHI3|AR13B_DANRE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8JHI3|AR13B_DANRE ADP-ribosylation factor-like protein 13B
           OS=Danio rerio GN=arl13b PE=2 SV=1
          Length = 407

 Score =  246 bits (627), Expect = 2e-64
 Identities = 115/213 (53%), Positives = 156/213 (73%)
 Frame = +2

Query: 95  MLSLMANCFTWIKQRREPSKKVTLLMVGLDNAGKTSTVADLTGESTDGIVPTIGFQNSSF 274
           M +LMANC  W+K+ REP++KVTL+MVGLDNAGKT+TV  + GES   + PT+GF     
Sbjct: 1   MFNLMANCCNWLKRWREPARKVTLVMVGLDNAGKTATVRGIQGESPLDVAPTVGFSKVDL 60

Query: 275 SLYKFQVTLFDVGGGPRIRSIWKIYYADCYGIVFVVDSSDADRLEESKKILHETEAQPRV 454
              KF+VT+FD+GGG RIR IWK YY++ YG+VFVVDSSD  R++E++  + E    PR+
Sbjct: 61  KQGKFEVTIFDLGGGKRIRGIWKNYYSESYGVVFVVDSSDVQRIQETRDTMAEVLRHPRI 120

Query: 455 SGKPLLVLGNKQDCEGALNESELRRKLELDKLTQKYKCPCQVFCCTAVLGKENKVDKQIK 634
           +GKP+LVL NKQD +GA+ E+++   L L+KL  + KC CQ+  C+AVLG   KVDK IK
Sbjct: 121 AGKPVLVLANKQDQDGAMAEADIIETLSLEKLVNENKCLCQIEPCSAVLGYGKKVDKSIK 180

Query: 635 KGFRWLLSEVSKDFENISRRVEKDLAEQKIEQD 733
            G  WLL+ ++KD+E IS RV+KD AEQK +++
Sbjct: 181 NGLNWLLNNIAKDYEAISERVQKDTAEQKAQEE 213